PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504769.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 337aa    MW: 36797.1 Da    PI: 8.3443
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.1e-12184210127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ykt +Cr + ++G C+y ++C+FaHg+
  XP_004504769.1 184 YKTDICRAWEESGNCRYNSKCQFAHGR 210
                     9************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.0E-16181214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-9182214IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-6183210IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9184210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338184211IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MENAMMNNGN MKVSKVRRTL NENVSPLQVE LDDKRGRYLQ STTMSPGFQP YAENIDTGSP  60
LARYFFAGSP ISGKSSESFT SPIFGSSKYR SARMQQYCAT SSGNSSFGSR GRLSLSPLSS  120
IENMEIKPLM SPPMYGTPVK VDEEVIVMDD IQVRPMSGGK NGRSSSSSSS RGSGSSSSSS  180
KSVYKTDICR AWEESGNCRY NSKCQFAHGR EELHPSRLMK SKSEAQTSKL SIRLGQGTYG  240
PNSRVVHEHP AVTESECALT GLITSQPASP EPYRSTHANS NIINDWSPLD DGIDVVLPNG  300
SDKVPSREEV DAYIFGLLNE PTTKRRLPVF VAICEGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504769.10.0PREDICTED: zinc finger protein 36, C3H1 type-like 2
RefseqXP_004504770.10.0PREDICTED: zinc finger protein 36, C3H1 type-like 2
TrEMBLA0A072UPE41e-132A0A072UPE4_MEDTR; Uncharacterized protein
STRINGGLYMA08G07981.19e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.23e-07C3H family protein